This just prevents people from seeing a black screen for a long time and assuming something is going wrong.
This initial setup is installaing flatpaks to the mounted home directory. This will not need to happen on every container startup. So this black screen is only a problem on the first start. But this change at least gives people something to look at.
Closes#50
Move some files to locations that make more sense...
Downloads go to Downloads
Init scripts go to an "init" directory
Add a script for clearing up some memory - May or may not use it.